IL_9B0R_036

3D structure

PDB id

9B0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human hibernating class2 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9B0R|1|L5|G|748, 9B0R|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0R_036 not in the Motif Atlas

Geometric match to IL_8P9A_248

Geometric discrepancy: 0.2515

The information below is about IL_8P9A_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9B0R|1|L5|G|745
9B0R|1|L5|A|746
9B0R|1|L5|A|747
9B0R|1|L5|G|748
9B0R|1|L5|G|749
9B0R|1|L5|U|750
9B0R|1|L5|G|751
9B0R|1|L5|G|752
*
9B0R|1|L5|U|911
9B0R|1|L5|G|912
9B0R|1|L5|U|913
9B0R|1|L5|U|914
9B0R|1|L5|A|915
9B0R|1|L5|C|916
9B0R|1|L5|A|917
9B0R|1|L5|G|918
9B0R|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a