IL_9B0W_051

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9B0W|1|L5|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_051 not in the Motif Atlas

Geometric match to IL_4V9F_090

Geometric discrepancy: 0.2576

The information below is about IL_4V9F_090

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_73464.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9B0W|1|L5|G|1360
9B0W|1|L5|G|1361
*
9B0W|1|L5|C|1376
9B0W|1|L5|G|1377
9B0W|1|L5|C|1378
9B0W|1|L5|C|1379

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

60S ribosomal protein L15