IL_9B0W_056

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9B0W|1|L5|A|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_056 not in the Motif Atlas

Homologous match to IL_8P9A_252

Geometric discrepancy: 0.0663

The information below is about IL_8P9A_252

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9B0W|1|L5|C|1467
9B0W|1|L5|C|1468
*
9B0W|1|L5|G|1496
9B0W|1|L5|A|1497
9B0W|1|L5|G|1498

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29