IL_9B0W_080

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_080 not in the Motif Atlas

Homologous match to IL_8CRE_050

Geometric discrepancy: 0.0737

The information below is about IL_8CRE_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0W|1|L5|U|1861
9B0W|1|L5|U|1862
9B0W|1|L5|U|1863
*
9B0W|1|L5|A|1871
9B0W|1|L5|G|1872
9B0W|1|L5|A|1873

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29