IL_9B0W_107

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

9B0W|1|L5|G|2652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_107 not in the Motif Atlas

Geometric match to IL_7D7W_002

Geometric discrepancy: 0.2899

The information below is about IL_7D7W_002

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9B0W|1|L5|C|2651
9B0W|1|L5|G|2652
9B0W|1|L5|C|2653
*
9B0W|1|L5|G|2681
9B0W|1|L5|G|2682

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a