IL_9B0W_132

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9B0W|1|L5|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_132 not in the Motif Atlas

Homologous match to IL_8CRE_100

Geometric discrepancy: 0.1163

The information below is about IL_8CRE_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9B0W|1|L5|U|3927
9B0W|1|L5|A|3928
9B0W|1|L5|G|3929
*
9B0W|1|L5|U|4181
9B0W|1|L5|G|4182
9B0W|1|L5|G|4183
9B0W|1|L5|G|4184

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lo

60S ribosomal protein L36a

Chain PE

Transfer RNA; tRNA