IL_9B0W_154

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9B0W|1|L5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_154 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.2198

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9B0W|1|L5|C|4582
9B0W|1|L5|C|4583
9B0W|1|L5|A|4584
9B0W|1|L5|U|4585
*
9B0W|1|L5|A|4717
9B0W|1|L5|G|4718
9B0W|1|L5|G|4719
9B0W|1|L5|C|4720
9B0W|1|L5|G|4721

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a