IL_9B0W_200

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0W_200 not in the Motif Atlas

Homologous match to IL_8P9A_384

Geometric discrepancy: 0.2572

The information below is about IL_8P9A_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23751.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9B0W|1|S2|U|152
9B0W|1|S2|G|153
9B0W|1|S2|U|154
*
9B0W|1|S2|A|164
9B0W|1|S2|G|165
9B0W|1|S2|A|166

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24