IL_9B4Z_014

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9B4Z|1|AA|U|244, 9B4Z|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_014 not in the Motif Atlas

Geometric match to IL_8B0X_013

Geometric discrepancy: 0.0999

The information below is about IL_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9B4Z|1|AA|G|242
9B4Z|1|AA|A|243
9B4Z|1|AA|U|244
9B4Z|1|AA|U|245
9B4Z|1|AA|A|246
9B4Z|1|AA|G|247
*
9B4Z|1|AA|C|277
9B4Z|1|AA|G|278
9B4Z|1|AA|A|279
9B4Z|1|AA|C|280
9B4Z|1|AA|G|281
9B4Z|1|AA|A|282
9B4Z|1|AA|U|283
9B4Z|1|AA|C|284

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17