IL_9B4Z_022

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9B4Z|1|AA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_022 not in the Motif Atlas

Geometric match to IL_8B0X_021

Geometric discrepancy: 0.0765

The information below is about IL_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9B4Z|1|AA|G|446
9B4Z|1|AA|G|447
9B4Z|1|AA|A|448
9B4Z|1|AA|G|449
9B4Z|1|AA|G|450
*
9B4Z|1|AA|C|483
9B4Z|1|AA|G|484
9B4Z|1|AA|U|485
9B4Z|1|AA|U|486
9B4Z|1|AA|A|487
9B4Z|1|AA|C|488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16