IL_9B4Z_037

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_037 not in the Motif Atlas

Geometric match to IL_8B0X_036

Geometric discrepancy: 0.0489

The information below is about IL_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9B4Z|1|AA|C|779
9B4Z|1|AA|A|780
9B4Z|1|AA|A|781
9B4Z|1|AA|A|782
9B4Z|1|AA|C|783
*
9B4Z|1|AA|G|799
9B4Z|1|AA|G|800
9B4Z|1|AA|U|801
9B4Z|1|AA|A|802
9B4Z|1|AA|G|803

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain AU

30S ribosomal protein S21

Chain BA

Large subunit ribosomal RNA; LSU rRNA