IL_9B4Z_038

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_038 not in the Motif Atlas

Geometric match to IL_8B0X_037

Geometric discrepancy: 0.0464

The information below is about IL_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

9B4Z|1|AA|G|887
9B4Z|1|AA|G|888
9B4Z|1|AA|A|889
9B4Z|1|AA|G|890
9B4Z|1|AA|U|891
9B4Z|1|AA|A|892
9B4Z|1|AA|C|893
9B4Z|1|AA|G|894
*
9B4Z|1|AA|U|905
9B4Z|1|AA|A|906
9B4Z|1|AA|A|907
9B4Z|1|AA|A|908
9B4Z|1|AA|A|909
9B4Z|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12