IL_9B4Z_048

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

9B4Z|1|AA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_048 not in the Motif Atlas

Geometric match to IL_8B0X_048

Geometric discrepancy: 0.0633

The information below is about IL_8B0X_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9B4Z|1|AA|U|1060
9B4Z|1|AA|G|1061
*
9B4Z|1|AA|C|1195
9B4Z|1|AA|A|1196
9B4Z|1|AA|A|1197

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AE

30S ribosomal protein S5

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14

Chain AV

mRNA

Chain AW

Transfer RNA; tRNA