IL_9B4Z_071

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_071 not in the Motif Atlas

Geometric match to IL_8B0X_070

Geometric discrepancy: 0.0418

The information below is about IL_8B0X_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9B4Z|1|BA|G|188
9B4Z|1|BA|G|189
9B4Z|1|BA|A|190
9B4Z|1|BA|A|191
9B4Z|1|BA|C|192
9B4Z|1|BA|U|193
9B4Z|1|BA|G|194
*
9B4Z|1|BA|C|201
9B4Z|1|BA|U|202
9B4Z|1|BA|A|203
9B4Z|1|BA|A|204
9B4Z|1|BA|G|205
9B4Z|1|BA|U|206
9B4Z|1|BA|A|207
9B4Z|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28