IL_9B4Z_072

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_072 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0485

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9B4Z|1|BA|C|239
9B4Z|1|BA|C|240
9B4Z|1|BA|A|241
9B4Z|1|BA|G|242
9B4Z|1|BA|U|243
9B4Z|1|BA|A|244
9B4Z|1|BA|G|245
*
9B4Z|1|BA|C|253
9B4Z|1|BA|G|254
9B4Z|1|BA|A|255
9B4Z|1|BA|A|256
9B4Z|1|BA|C|257
9B4Z|1|BA|G|258

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15