IL_9B4Z_086

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9B4Z|1|BA|G|776, 9B4Z|1|BA|A|788, 9B4Z|1|BA|A|789, 9B4Z|1|BA|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_086 not in the Motif Atlas

Geometric match to IL_8B0X_085

Geometric discrepancy: 0.0392

The information below is about IL_8B0X_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9B4Z|1|BA|G|775
9B4Z|1|BA|G|776
9B4Z|1|BA|G|777
*
9B4Z|1|BA|C|787
9B4Z|1|BA|A|788
9B4Z|1|BA|A|789
9B4Z|1|BA|U|790
9B4Z|1|BA|C|791

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BE

50S ribosomal protein L4

Chain BS

50S ribosomal protein L22