IL_9B4Z_095

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_095 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.179

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9B4Z|1|BA|G|875
9B4Z|1|BA|C|876
9B4Z|1|BA|A|877
9B4Z|1|BA|A|878
9B4Z|1|BA|G|879
*
9B4Z|1|BA|C|898
9B4Z|1|BA|A|899
9B4Z|1|BA|A|900
9B4Z|1|BA|C|901
9B4Z|1|BA|C|902

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain BM

50S ribosomal protein L16