IL_9B4Z_128

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_128 not in the Motif Atlas

Geometric match to IL_8B0X_180

Geometric discrepancy: 0.0449

The information below is about IL_8B0X_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9B4Z|1|BA|G|1666
9B4Z|1|BA|G|1667
9B4Z|1|BA|A|1668
9B4Z|1|BA|A|1669
9B4Z|1|BA|C|1670
9B4Z|1|BA|U|1671
9B4Z|1|BA|A|1672
9B4Z|1|BA|G|1673
9B4Z|1|BA|G|1674
*
9B4Z|1|BA|C|1990
9B4Z|1|BA|U|1991
9B4Z|1|BA|G|1992
9B4Z|1|BA|U|1993
9B4Z|1|BA|C|1994

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14