IL_9B4Z_180

3D structure

PDB id

9B4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B4Z_180 not in the Motif Atlas

Geometric match to IL_8QYX_167

Geometric discrepancy: 0.0469

The information below is about IL_8QYX_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

9B4Z|1|BB|C|30
9B4Z|1|BB|C|31
*
9B4Z|1|BB|G|51
9B4Z|1|BB|A|52
9B4Z|1|BB|A|53
9B4Z|1|BB|G|54

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L5

Chain BO

50S ribosomal protein L18