IL_9B51_073

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B51_073 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0445

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9B51|1|BA|C|239
9B51|1|BA|C|240
9B51|1|BA|A|241
9B51|1|BA|G|242
9B51|1|BA|U|243
9B51|1|BA|A|244
9B51|1|BA|G|245
*
9B51|1|BA|C|253
9B51|1|BA|G|254
9B51|1|BA|A|255
9B51|1|BA|A|256
9B51|1|BA|C|257
9B51|1|BA|G|258

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15