IL_9BDL_003

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

9BDL|1|A18S|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_003 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.2912

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9BDL|1|A18S|C|37
9BDL|1|A18S|A|38
9BDL|1|A18S|A|39
9BDL|1|A18S|A|40
*
9BDL|1|A18S|U|514
9BDL|1|A18S|G|515
9BDL|1|A18S|A|516
9BDL|1|A18S|C|517
9BDL|1|A18S|G|518

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9