IL_9BDL_016

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_016 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.2237

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9BDL|1|A18S|C|188
9BDL|1|A18S|U|189
9BDL|1|A18S|G|190
9BDL|1|A18S|A|191
9BDL|1|A18S|C|192
*
9BDL|1|A18S|G|207
9BDL|1|A18S|G|208
9BDL|1|A18S|A|209
9BDL|1|A18S|U|210
9BDL|1|A18S|G|211

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS08

40S ribosomal protein S8