IL_9BDL_032

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_032 not in the Motif Atlas

Geometric match to IL_5UNE_005

Geometric discrepancy: 0.2608

The information below is about IL_5UNE_005

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_76776.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9BDL|1|A18S|U|566
9BDL|1|A18S|C|567
9BDL|1|A18S|C|568
9BDL|1|A18S|A|569
*
9BDL|1|A18S|U|581
9BDL|1|A18S|U|582
9BDL|1|A18S|A|583
9BDL|1|A18S|A|584

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS09

40S ribosomal protein S9

Chain AS24

40S ribosomal protein S24