IL_9BDL_036

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

9BDL|1|A18S|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_036 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1241

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9BDL|1|A18S|G|665
9BDL|1|A18S|U|666
9BDL|1|A18S|U|667
9BDL|1|A18S|A|668
9BDL|1|A18S|A|669
9BDL|1|A18S|A|670
9BDL|1|A18S|A|671
*
9BDL|1|A18S|U|1161
9BDL|1|A18S|C|1162

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS23

40S ribosomal protein S23

Chain AS26

eS26