IL_9BDL_048

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9BDL|1|A18S|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_048 not in the Motif Atlas

Geometric match to IL_6CZR_128

Geometric discrepancy: 0.2555

The information below is about IL_6CZR_128

Detailed Annotation

Single bulged G, near cWW

Broad Annotation

Single bulged G, near cWW

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

9BDL|1|A18S|G|925
9BDL|1|A18S|A|926
9BDL|1|A18S|C|927
*
9BDL|1|A18S|G|1014
9BDL|1|A18S|U|1015
9BDL|1|A18S|U|1016
9BDL|1|A18S|U|1017

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS13

40S ribosomal protein S13

Chain AS27

40S ribosomal protein S27