IL_9BDL_058

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_058 not in the Motif Atlas

Geometric match to IL_4V88_412

Geometric discrepancy: 0.1729

The information below is about IL_4V88_412

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

9BDL|1|A18S|G|1108
9BDL|1|A18S|C|1109
9BDL|1|A18S|G|1110
*
9BDL|1|A18S|C|1123
9BDL|1|A18S|C|1124

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS00

40S_SA_C domain-containing protein

Chain AS01

40S ribosomal protein S3a

Chain AS17

40S ribosomal protein S17

Chain AS27

40S ribosomal protein S27