IL_9BDL_072
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 9BDL|1|A18S|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_072 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1224
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
9BDL|1|A18S|C|1337
9BDL|1|A18S|G|1338
*
9BDL|1|A18S|C|1488
9BDL|1|A18S|A|1489
9BDL|1|A18S|G|1490
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain ANG
- Angiogenin
- Chain AS02
- 40S ribosomal protein S2
- Chain AS03
- 40S ribosomal protein S3
- Chain AS16
- Small ribosomal subunit protein uS9
- Chain AS20
- 40S ribosomal protein S20
- Chain AS29
- 40S ribosomal protein S29
- Chain MRNA
- Model mRNA
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