IL_9BDL_114

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_114 not in the Motif Atlas

Geometric match to IL_7MLW_007

Geometric discrepancy: 0.3803

The information below is about IL_7MLW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9BDL|1|A28S|G|443
9BDL|1|A28S|G|444
9BDL|1|A28S|U|445
9BDL|1|A28S|C|446
*
9BDL|1|A28S|G|1300
9BDL|1|A28S|C|1301
9BDL|1|A28S|U|1302
9BDL|1|A28S|A|1303
9BDL|1|A28S|C|1304

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain A58S

5.8S ribosomal RNA; 5.8S rRNA

Chain AL32

Large ribosomal subunit protein eL32

Chain AL33

60S ribosomal protein L35a