IL_9BDL_130

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

9BDL|1|A28S|A|932, 9BDL|1|A28S|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9BDL|1|A28S|A|732
9BDL|1|A28S|A|733
9BDL|1|A28S|G|734
9BDL|1|A28S|G|735
*
9BDL|1|A28S|C|928
9BDL|1|A28S|A|929
9BDL|1|A28S|G|930
9BDL|1|A28S|C|931
9BDL|1|A28S|A|932
9BDL|1|A28S|G|933
9BDL|1|A28S|C|934
9BDL|1|A28S|A|935
9BDL|1|A28S|G|935|||A
9BDL|1|A28S|C|936
9BDL|1|A28S|U|937

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL14

Large ribosomal subunit protein eL14

Chain AL20

60S ribosomal protein L18a