IL_9BDL_131

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

9BDL|1|A28S|C|738, 9BDL|1|A28S|C|738|||A, 9BDL|1|A28S|C|924, 9BDL|1|A28S|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_131 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2263

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9BDL|1|A28S|C|737
9BDL|1|A28S|C|738
9BDL|1|A28S|C|738|||A
9BDL|1|A28S|G|739
*
9BDL|1|A28S|C|923
9BDL|1|A28S|C|924
9BDL|1|A28S|C|925
9BDL|1|A28S|G|926

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL14

Large ribosomal subunit protein eL14