IL_9BDL_136

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

9BDL|1|A28S|C|1214, 9BDL|1|A28S|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_136 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.292

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

9BDL|1|A28S|C|1082
9BDL|1|A28S|U|1083
9BDL|1|A28S|C|1084
*
9BDL|1|A28S|G|1213
9BDL|1|A28S|C|1214
9BDL|1|A28S|C|1215
9BDL|1|A28S|C|1216
9BDL|1|A28S|G|1217

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL07

60S ribosomal protein L7

Chain AL29

Large ribosomal subunit protein eL29