IL_9BDL_212

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9BDL|1|A28S|A|3901, 9BDL|1|A28S|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_212 not in the Motif Atlas

Homologous match to IL_5TBW_092

Geometric discrepancy: 0.1086

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9BDL|1|A28S|G|3900
9BDL|1|A28S|A|3901
9BDL|1|A28S|A|3902
*
9BDL|1|A28S|U|4558
9BDL|1|A28S|A|4559
9BDL|1|A28S|C|4560
9BDL|1|A28S|C|4561

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL17

60S ribosomal protein L17