IL_9BDL_256

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

9BDL|1|A28S|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_256 not in the Motif Atlas

Geometric match to IL_1KUQ_002

Geometric discrepancy: 0.3732

The information below is about IL_1KUQ_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9BDL|1|A28S|C|4996
9BDL|1|A28S|G|4997
*
9BDL|1|A28S|U|5053
9BDL|1|A28S|C|5054
9BDL|1|A28S|G|5055

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL31

60S ribosomal protein L31