IL_9BDL_276

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGC*GCC

Length

7 nucleotides

Bulged bases

9BDL|1|A28S|U|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_276 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.1806

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BDL|1|A28S|G|491
9BDL|1|A28S|U|492
9BDL|1|A28S|G|493
9BDL|1|A28S|C|494
*
9BDL|1|A28S|G|660
9BDL|1|A28S|C|661
9BDL|1|A28S|C|662

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL18

Large ribosomal subunit protein eL18