IL_9BDL_282

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGGUGUAGAAUAAG*CUACU

Length

19 nucleotides

Bulged bases

9BDL|1|A28S|G|3958

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_282 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3983

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

9BDL|1|A28S|A|3954
9BDL|1|A28S|G|3955
9BDL|1|A28S|G|3956
9BDL|1|A28S|U|3957
9BDL|1|A28S|G|3958
9BDL|1|A28S|U|3959
9BDL|1|A28S|A|3960
9BDL|1|A28S|G|3961
9BDL|1|A28S|A|3962
9BDL|1|A28S|A|3963
9BDL|1|A28S|U|3964
9BDL|1|A28S|A|3965
9BDL|1|A28S|A|3966
9BDL|1|A28S|G|3967
*
9BDL|1|A28S|C|4054
9BDL|1|A28S|U|4055
9BDL|1|A28S|A|4056
9BDL|1|A28S|C|4057
9BDL|1|A28S|U|4058

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA