IL_9BDL_290

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUGA*UGAUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_290 not in the Motif Atlas

Homologous match to IL_9H3G_106

Geometric discrepancy: 0.5006

The information below is about IL_9H3G_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.3

Basepair signature

cWW-L-R-L-R-L-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9BDL|1|A28S|C|3948
9BDL|1|A28S|A|3949
9BDL|1|A28S|U|3950
9BDL|1|A28S|G|3951
9BDL|1|A28S|A|3952
*
9BDL|1|A28S|U|4060
9BDL|1|A28S|G|4061
9BDL|1|A28S|A|4062
9BDL|1|A28S|U|4063
9BDL|1|A28S|C|4064
9BDL|1|A28S|G|4065

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL36

60S ribosomal protein L36

Chain AS01

40S ribosomal protein S3a