IL_9BDN_003

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

9BDN|1|A18S|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_003 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3152

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

9BDN|1|A18S|C|37
9BDN|1|A18S|A|38
9BDN|1|A18S|A|39
9BDN|1|A18S|A|40
*
9BDN|1|A18S|U|514
9BDN|1|A18S|G|515
9BDN|1|A18S|A|516
9BDN|1|A18S|C|517
9BDN|1|A18S|G|518

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9