IL_9BDN_004
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 9BDN|1|A18S|U|44, 9BDN|1|A18S|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_004 not in the Motif Atlas
- Homologous match to IL_8C3A_395
- Geometric discrepancy: 0.1222
- The information below is about IL_8C3A_395
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80458.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9BDN|1|A18S|G|41
9BDN|1|A18S|A|42
9BDN|1|A18S|U|43
9BDN|1|A18S|U|44
9BDN|1|A18S|A|45
9BDN|1|A18S|A|46
9BDN|1|A18S|G|47
*
9BDN|1|A18S|C|479
9BDN|1|A18S|G|480
9BDN|1|A18S|C|481
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS23
- 40S ribosomal protein S23
- Chain TIRN
- Transfer RNA; tRNA
Coloring options: