IL_9BDN_014

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_014 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.215

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9BDN|1|A18S|C|188
9BDN|1|A18S|U|189
9BDN|1|A18S|G|190
9BDN|1|A18S|A|191
9BDN|1|A18S|C|192
*
9BDN|1|A18S|G|207
9BDN|1|A18S|G|208
9BDN|1|A18S|A|209
9BDN|1|A18S|U|210
9BDN|1|A18S|G|211

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS08

40S ribosomal protein S8