IL_9BDN_023

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_023 not in the Motif Atlas

Homologous match to IL_8C3A_414

Geometric discrepancy: 0.1609

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

9BDN|1|A18S|C|459
9BDN|1|A18S|A|460
9BDN|1|A18S|U|461
*
9BDN|1|A18S|A|468
9BDN|1|A18S|A|469
9BDN|1|A18S|G|470

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL23

60S ribosomal protein L23

Chain AS06

40S ribosomal protein S6

Chain AS24

40S ribosomal protein S24