IL_9BDN_039

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCU*AAGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_039 not in the Motif Atlas

Geometric match to IL_4QIK_001

Geometric discrepancy: 0.3676

The information below is about IL_4QIK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

9BDN|1|A18S|G|744
9BDN|1|A18S|C|745
9BDN|1|A18S|U|749
*
9BDN|1|A18S|A|794
9BDN|1|A18S|A|795
9BDN|1|A18S|G|796
9BDN|1|A18S|C|797

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS07

Small ribosomal subunit protein eS7