IL_9BDN_045

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_045 not in the Motif Atlas

Geometric match to IL_5J7L_061

Geometric discrepancy: 0.2509

The information below is about IL_5J7L_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9BDN|1|A18S|C|877
9BDN|1|A18S|G|878
9BDN|1|A18S|C|879
*
9BDN|1|A18S|G|907
9BDN|1|A18S|A|908
9BDN|1|A18S|G|909

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL19

60S ribosomal protein L19