IL_9BDN_047

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

9BDN|1|A18S|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_047 not in the Motif Atlas

Homologous match to IL_8C3A_436

Geometric discrepancy: 0.0903

The information below is about IL_8C3A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

9BDN|1|A18S|G|924
9BDN|1|A18S|G|925
9BDN|1|A18S|A|926
9BDN|1|A18S|C|927
*
9BDN|1|A18S|G|1014
9BDN|1|A18S|U|1015
9BDN|1|A18S|U|1016
9BDN|1|A18S|U|1017
9BDN|1|A18S|U|1018

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS13

40S ribosomal protein S13

Chain AS27

40S ribosomal protein S27