IL_9BDN_053
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_053 not in the Motif Atlas
- Homologous match to IL_8C3A_442
- Geometric discrepancy: 0.1028
- The information below is about IL_8C3A_442
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9BDN|1|A18S|C|1047
9BDN|1|A18S|G|1048
9BDN|1|A18S|A|1049
9BDN|1|A18S|A|1050
9BDN|1|A18S|G|1051
*
9BDN|1|A18S|C|1067
9BDN|1|A18S|G|1068
9BDN|1|A18S|U|1069
9BDN|1|A18S|A|1070
9BDN|1|A18S|G|1071
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL02
- 60S ribosomal protein L8
- Chain AS14
- Small ribosomal subunit protein uS11
- Chain AS26
- eS26
Coloring options: