IL_9BDN_054
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 9BDN|1|A18S|C|1153, 9BDN|1|A18S|U|1155, 9BDN|1|A18S|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_054 not in the Motif Atlas
- Homologous match to IL_8C3A_443
- Geometric discrepancy: 0.1249
- The information below is about IL_8C3A_443
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47729.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BDN|1|A18S|C|1091
9BDN|1|A18S|G|1092
9BDN|1|A18S|A|1093
*
9BDN|1|A18S|U|1152
9BDN|1|A18S|C|1153
9BDN|1|A18S|U|1154
9BDN|1|A18S|U|1155
9BDN|1|A18S|U|1156
9BDN|1|A18S|G|1157
9BDN|1|A18S|G|1158
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS02
- 40S ribosomal protein S2
- Chain AS11
- 40S ribosomal protein S11
- Chain AS13
- 40S ribosomal protein S13
- Chain AS21
- eS21
- Chain AS22
- 40S ribosomal protein S15a
- Chain AS23
- 40S ribosomal protein S23
- Chain AS27
- 40S ribosomal protein S27
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