IL_9BDN_056

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_056 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1897

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9BDN|1|A18S|U|1101
9BDN|1|A18S|G|1102
9BDN|1|A18S|C|1103
*
9BDN|1|A18S|G|1129
9BDN|1|A18S|G|1130
9BDN|1|A18S|G|1131

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS01

40S ribosomal protein S3a

Chain AS13

40S ribosomal protein S13

Chain AS17

40S ribosomal protein S17

Chain AS27

40S ribosomal protein S27