IL_9BDN_062

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_062 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.0932

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9BDN|1|A18S|C|1230
9BDN|1|A18S|C|1231
9BDN|1|A18S|U|1232
*
9BDN|1|A18S|G|1526
9BDN|1|A18S|C|1527
9BDN|1|A18S|G|1528

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS16

Small ribosomal subunit protein uS9

Chain AS18

40S ribosomal protein S18

Chain AS19

Small ribosomal subunit protein eS19

Chain AS20

40S ribosomal protein S20

Chain PTRN

Transfer RNA; tRNA