IL_9BDN_068

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9BDN|1|A18S|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_068 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.1123

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9BDN|1|A18S|G|1325
9BDN|1|A18S|U|1326
9BDN|1|A18S|G|1327
*
9BDN|1|A18S|C|1502
9BDN|1|A18S|C|1503

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain ANG

Angiogenin

Chain AS10

40S ribosomal protein S10

Chain AS29

40S ribosomal protein S29