IL_9BDN_074

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

9BDN|1|A18S|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_074 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.344

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9BDN|1|A18S|C|1395
9BDN|1|A18S|A|1396
9BDN|1|A18S|U|1397
9BDN|1|A18S|G|1398
9BDN|1|A18S|C|1399
*
9BDN|1|A18S|G|1447
9BDN|1|A18S|A|1448
9BDN|1|A18S|G|1449
9BDN|1|A18S|G|1450

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain ARAC

Receptor of activated protein C kinase 1

Chain AS16

Small ribosomal subunit protein uS9

Chain AS17

40S ribosomal protein S17

Chain AS20

40S ribosomal protein S20