IL_9BDN_079
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_079 not in the Motif Atlas
- Geometric match to IL_4NGF_002
- Geometric discrepancy: 0.1187
- The information below is about IL_4NGF_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9BDN|1|A18S|A|1537
9BDN|1|A18S|C|1538
9BDN|1|A18S|U|1539
*
9BDN|1|A18S|A|1594
9BDN|1|A18S|U|1595
9BDN|1|A18S|U|1596
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS05
- Ribosomal protein S5
- Chain AS16
- Small ribosomal subunit protein uS9
- Chain AS18
- 40S ribosomal protein S18
- Chain AS19
- Small ribosomal subunit protein eS19
- Chain AS25
- 40S ribosomal protein S25
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